Publications

Pages from my CV:

Journal papers All of the items have web links, almost all of which are Digital Object Identifier (DOI) links.

Book chapters

Conference papers

A list on a server at the US National Institutes of Health (NIH):

page at NIH This page contains only refereed journal articles and is sometimes not current.

A list similar to the “Journal papers” list but in the reverse order:

  1. Nan Xu, Peter C. Doerschuk, “Reconstruction of stochastic 3-D signals with symmetric statistics from 2-D projection images motivated by cryo-electron microscopy”, IEEE Transactions on Image Processing, 2019.   DOI
  2. Yunye Gong, Srikrishna Karanam, Ziyan Wu, Kuan-Chuan Peng, Jan Ernst, Peter C. Doerschuk, “Learning Compositional Visual Concepts With Mutual Consistency”, 2018 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) pages 8659–8668, 2018.  Link
  3. Kai Ma, Yunye Gong, Tangi Aubert, Melik Z. Turker, Teresa Kao, Peter C. Doerschuk, Ulrich Wiesner, “Self-assembly of highly symmetrical, ultrasmall inorganic cages directed by surfactant micelles”, Nature 558:577–580, 28 June, 2018.   DOI
  4. Nan Xu, David Veesler, Peter C.Doerschuk, John E. Johnson, ” Allosteric effects in bacteriophage HK97 procapsids revealed directly from covariance analysis of cryo EM data“, Journal of Structural Biology, vol. 202, pp. 129, 2018.  DOI
  5. Nan Xu, R. Nathan Spreng and Peter C. Doerschuk, “Initial Validation for the Estimation of Resting-State fMRI Effective Connectivity by a Generalization of the Correlation Approach.” Frontiers in Neuroscience, 11:271, 2017.
  6. Tejapratap Bollu, Nathan R Cornelius, John Sunwoo, Nozomi Nishimura, Chris B Schaffer, and Peter C Doerschuk, “Experimentally constrained circuit model of cortical arteriole networks for understanding flow redistribution due to occlusion and neural activation“, Journal of Cerebral Blood Flow & Metabolism, Vol 38, Issue 1, pp. 38 – 44, 2017.  DOI
  7. Kang Wang, Chi-yu Fu, Carlos E. Catalano, Peter E. Prevelige, Peter C. Doerschuk, John E. Johnson, “Detecting asymmetry in the presence of symmetry with maximum likelihood three dimensional reconstructions of viruses from electron microscope images“, IET Image Processing, 10 (2016), pp. 624-629.
  8. A. J. Bares, M. A. Pender, M. A. Mejooli, S. Tilley, K. E. Chen, J. Dong, P. C. Doerschuk, and C. B. Schaffer, “Hyperspectral Imaging in Live Mouse Cortex Using a 48-Channel Multiphoton Microscope,” in Frontiers in Optics 2016, OSA Technical Digest (online) (Optical Society of America, 2016), paper FTh5D.5.
  9. P.C. Doerschuk, Y. Gong, N. Xu, T. Domitrovic, J.E. Johnson, “Virus particle dynamics derived from CryoEM studies“, Curr Opin Virol, 18 (2016), pp. 57-63.
  10. Yunye Gong, David Veesler, Peter C. Doerschuk, John E. Johnson, “Effect of the viral protease on the dynamics of bacteriophage HK97 maturation intermediates characterized by variance analysis of cryo EM particle ensembles”, Journal of Structural Biology 193(3):188–195, March 2016.
  11. Y. Gong and P. C. Doerschuk, “3-D understanding of electron microscopy images of nano bio objects by computing generative mechanical models,” 2016 IEEE International Conference on Image Processing (ICIP), Phoenix, AZ, 2016, pp. 3161-3165.  doi: 10.1109/ICIP.2016.7532942
  12. Nathan R. Cornelius, Nozomi Nishimura, Minah Suh, Theodore H. Schwartz, and Peter C. Doerschuk, “A mathematical model relating cortical oxygenated and deoxygenated hemoglobin flows and volumes to neural activity”, Journal of Neural Engineering, 12(4):046013, August 2015. DOI
  13. Jinghua Tang, Bradley M. Kearney, Qiu Wang, Peter C. Doerschuk, Timothy S. Baker, and John E. Johnson, “Dynamic and geometric analyses of Nudaurelia capensis omega virus maturation reveal the energy landscape of particle transitions“, J. Molecular Recognition, vol. 27, no. 4, pp. 230-237, 10 February 2014.
  14. Tatiana Domitrovic, Navid Movahed, Brian Bothner, Tsutomu Matsui, Qiu Wang, Peter Doerschuk, John E. Johnson “Virus Assembly and Maturation: Auto-regulation Through Allosteric Molecular Switches“, Journal of Molecular Biology vol. 425, no. 9, pp. 1488-1496, 13 May, 2013.
  15. Qiu Wang, Tsutomu Matsui, Tatiana Domitrovic, Yili Zheng, Peter C. Doerschuk, John E. Johnson, “Dynamics in cryo EM reconstructions visualized with maximum-likelihood derived variance maps“, Journal of Structural Biology, vol. 181, no. 3, pp. 195-206, 2013.
  16. Thom P. Santisakultarm, Nathan R. Cornelius, Nozomi Nishimura, Andrew I. Schafer, Richard T. Silver, Peter C. Doerschuk, William L. Olbricht, and Chris B. Schaffer, “In Vivo Two-photon Excited Fluorescence Microscopy Reveals Cardiac- and Respiration-Dependent Pulsatile Blood Flow in Cortical Blood Vessels in Mice“, Am J Physiol Heart Circ Physiol, vol. 302, pp. H1367-H1377, 2012.
  17. Yili Zheng, Qiu Wang, and Peter C. Doerschuk, “Three-dimensional reconstruction of the statistics of heterogeneous objects from a collection of one projection image of each object“, Journal of the Optical Society of America Series A, vol. 29, no. 5, pp. 959-970, May 2012.
  18. Martin H. Plawecki, Ulrich S. Zimmermann, Victor Vitvitskiy, Peter C. Doerschuk, David W. Crabb, Sean J. O’Connor, “Alcohol Exposure Rate Control through Physiologically-Based Pharmacokinetic Modeling“, Alcoholism: Clinical and Experimental Research, vol. 36, no. 6, pp. 1042-1049, June 2012.
  19. Seunghee Lee and Peter C. Doerschuk and John E. Johnson, “Multi-class maximum likelihood symmetry determination and motif reconstruction of 3-D helical objects from projection images for electron microscopy“, IEEE Transactions on Image Processing, vol. 20, no. 7, pp. 1962-1976, July 2011.
  20. Kang Wang and Chi-yu Fu and Reza Khayat and Peter C. Doerschuk and John E. Johnson, “In vivo virus structures: Simultaneous classification, resolution enhancement, and noise reduction in whole-cell electron tomography“, Journal of Structural Biology, vol. 174, no. 3, pp. 425-433, 2011.
  21. Chi-yu Fu, Kang Wang, Jason Lanman, Reza Khayat, Mark J. Young, Grant J. Jensen, Peter C. Doerschuk, and John E. Johnson, “In Vivo Assembly of an Archaeal Virus Studied with Whole Cell Electron Cryotomography“, Structure, vol. 18, no. 12, pp. 1579-1586, 8 December 2010.
  22. Fred Sigworth, Peter C. Doerschuk, Jose-Maria Carazo, Sjors H. W. Scheres, “An introduction to maximum-likelihood methods in cryo EM“, Methods in Enzymology, vol. 482, pp. 263-294, 2010, Elsevier.
  23. Cory J. Prust, Peter C. Doerschuk, Gabriel C. Lander, and John E. Johnson, “Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage P22 and maximum likelihood versions of Fourier Shell Correlation appropriate for measuring resolution of spherical or cylindrical objects“, Journal of Structural Biology, vol. 167, no. 185-199, 2009.
  24. Seunghee Lee, Peter C. Doerschuk, and John E. Johnson, “Reciprocal space representation of helical objects and their projection images for helices constructed from motifs without spherical symmetry“, Ultramicroscopy, vol. 109, pp. 253-263, 2009.
  25. Yili Zheng and Peter C. Doerschuk, “A Parallel Software Toolkit for Statistical 3-D Virus Reconstructions from Cryo Electron Microscopy Images Using Computer Clusters with Multi-core Shared-Memory Nodes“, IEEE International Parallel & Distributed Processing Symposium 2008 (IEEE IPDPS’08), 11 pages, Miami, FL, April 14-18, 2008. This is a selective Computer Engineering conference at which only 105 of 410 submissions were accepted and where the papers are both reviewed and revised and are as long as a regular IEEE Transactions paper.
  26. Martin H. Plawecki, Jae-Joon Han, Peter C. Doerschuk, Vijay Ramchandani, and Sean J. O’Connor, “Physiologically-based pharmacokinetic (PBPK) models for ethanol”, IEEE Transactions on Biomedical Engineering, vol. 55, no. 12, pp. 2691-2700, 2008.
  27. Jae-Joon Han, Peter C. Doerschuk, Saul B. Gelfand, and Sean J. O’Connor, “Models and signal processing for an implanted ethanol bio-sensor“, IEEE Transactions on Biomedical Engineering, vol. 55, no. 2, pp. 603-613, 2008.
  28. Junghoon Lee, Peter C. Doerschuk, and John E. Johnson, “Exact Reduced-Complexity Maximum Likelihood Reconstruction of Multiple 3-D Objects from Unlabeled Unoriented 2-D Projections and Electron Microscopy of Viruses“, IEEE Transactions on Image Processing, vol. 16, no. 12, pp. 2865-2878, 2007.
  29. Tianwei Lin, Wilfried Schildkamp, Keith Brister, Peter C. Doerschuk, Maddury Somayazulu, Ho-kwang Mao, and John E. Johnson, “The mechanism of high pressure induced ordering in a macromolecular crystal,” Acta Crystallographica D, vol. D61, pp. 737-743, 2005.
  30. Zhye Yin, Peter C. Doerschuk, and Saul B. Gelfand, “Model calculations for joint pattern recognition and signal reconstruction in cryo electron microscopy,” Communications in Information and Systems, vol. 4, no. 1, pp. 73-88, 2004.   Special Issue in honor of the 70th birthday of Professor Sanjoy K. Mitter.
  31. Zhye Yin, Yili Zheng, Peter C. Doerschuk, Padmaja Natarajan, and John E. Johnson, “A statistical approach to computer processing of cryo electron microscope images: virion classification and 3-D reconstruction,” Journal of Structural Biology, vol. 144, pp. 24-50, 2003.
  32. Po-Han Chen, Yuh-Chin Chang, Luh-Maan Chang, Peter C. Doerschuk “Application of Multiresolution Pattern Classification to Steel Bridge Coating Assessment,” J. Comp. in Civ. Engrg., vol. 16, no. 4, pp. 244-251, October 2002.
  33. Zhye Yin, Yili Zheng, and Peter C. Doerschuk, “An ab initio algorithm for low-resolution 3-D reconstructions from cryoelectron microscopy images,” Journal of Structural Biology, vol. 133, no. 2/3, pp. 132-142, February/March 2001.
  34. Yuh-Chin Chang, Srinivas R. Kadaba, Peter C. Doerschuk, Saul B. Gelfand, “Image restoration using recursive Markov random field models driven by Cauchy distributed noise,” IEEE Signal Processing Letters, vol. 8, no. 3, pp. 65-66, March 2001.
  35. Peter C. Doerschuk and John E. Johnson, “Ab initio reconstruction and experimental design for cryo electron microscopy,” IEEE Transactions on Information Theory, vol. 46, no. 5, pp. 1714-1729, August 2000.
  36. Yibin Zheng and Peter C. Doerschuk, “Explicit computation of orthonormal symmetrized harmonics with application to the identity representation of the icosahedral group,” SIAM Journal on Mathematical Analysis, vol. 32, no. 3, pp. 538-554, 2000.
  37. Wan-Chieh Pai and Peter C. Doerschuk, “Statistical AM-FM models, extended Kalman filter demodulation, Cramer-Rao bounds, and speech analysis,” IEEE Transactions on Signal Processing, vol. 48, no. 8, pp. 2300-2313, August 2000.
  38. Yibin Zheng, Peter C. Doerschuk, and John E. Johnson, “Symmetry-constrained 3D interpolation of viral x-ray crystallography data,” IEEE Transactions on Signal Processing, vol. 48, no. 1, pp. 214-222, January 2000.
  39. Ann E. Rundell, Raymond A. DeCarlo, Harm HogenEsch, Peter C. Doerschuk, “The humoral immune response to Haemophilus influenzae Type b: A mathematical model based on T-zone and germinal center B-cell dynamics,” Journal of Theoretical Biology, vol. 194, pp. 341-381, 1998.
  40. Yibin Zheng, Peter C. Doerschuk, “3-D Image Reconstruction from Averaged Fourier Transform Magnitude by Parameter Estimation,” IEEE Transactions on Image Processing, vol. 7, no. 11, pp. 1561-1570, November 1998.  http://www.ncbi.nlm.nih.gov/pubmed/18276221
  41. Shan Lu, Peter C. Doerschuk, “Performance Bounds for Nonlinear Filters,” IEEE Transactions on Aerospace and Electronic Systems, vol. 33, no. 1, pp. 316-318, January 1997.
  42. Yibin Zheng, Peter C. Doerschuk, “Iterative Reconstruction of 3-D Objects From Averaged Fourier Transform Magnitude: Solution and Fiber X-ray Scattering Problems,” Journal of the Optical Society of America Series A, vol. 13, no. 7, pp. 1483-1494, July 1996.
  43. Wai Ying Kan, James V. Krogmeier, Peter C. Doerschuk, “Model-Based Vehicle Tracking from Image Sequences with an Application to Road Surveillance,” Optical Engineering, vol. 35, no. 6, pp. 1723-1729, June 1996.
  44. Yibin Zheng, Peter C. Doerschuk, “Explicit Orthonormal Fixed Bases for Spaces of Functions that are Totally Symmetric Under the Rotational Symmetries of a Platonic Solid,” Acta Crystallographica, vol. A52, pp. 221-235, 1996.
  45. Shan Lu, Peter C. Doerschuk, “Nonlinear Modeling and Processing of Speech Based on Sums of AM-FM Formant Models,” IEEE Transactions on Signal Processing, vol. 44, no. 4, pp. 773-782, April 1996.
  46. Yibin Zheng, Peter C. Doerschuk, John E. Johnson, “Determination of Three-dimensional Low-resolution Viral Structure from Solution X-ray Scattering Data,” Biophysical Journal, vol. 69, no. 2, pp. 619-639, August 1995.
  47. Peter C. Doerschuk, “Cramer-Rao Bounds for Discrete-Time Nonlinear Filtering Problems,” IEEE Transactions on Automatic Control, vol. 40, no. 8, pp. 1465-1469, August 1995.
  48. Chi-hsin Wu, Peter C. Doerschuk, “Texture-based Segmentation Using Markov Random Field Models and Approximate Bayesian Estimators Based on Trees,” Journal of Mathematical Imaging and Vision, vol. 5, no. 4, pp. 277-286, December 1995 (Invited).
  49. Yibin Zheng, Peter C. Doerschuk, “Symbolic Symmetry Verification for Harmonic Functions Invariant Under Polyhedral Symmetries,” Computers in Physics, vol. 9, no. 4, pp. 433-437, July/August 1995.
  50. Samir Patel, Shan Lu, Peter C. Doerschuk, George R. Wodicka, “Sonic Phase Delay from Trachae to Chest Wall: Spatial and Inhaled Gas Dependence,” Medical & Biological Engineering & Computing, vol. 33, no. 4, pp. 571-574, July 1995.
  51. Chi-hsin Wu, Peter C. Doerschuk, “Tree Approximations to Markov Random Fields,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 17, no. 4, pp. 391-402, April 1995.
  52. Chi-hsin Wu, Peter C. Doerschuk, “Cluster Approximations for the Deterministic Computation of Bayesian Estimators Based on Markov Random Fields,” IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 17, no. 3, pp. 275-293, March 1995.
  53. Shan Lu, Peter C. Doerschuk, George R. Wodicka, “Parametric Phase Delay Estimation of Sound Transmitted Through Intact Human Lung,” Medical & Biological Engineering & Computing, vol. 33, no. 3, pp. 293-298, May 1995.
  54. Peter C. Doerschuk, “Bayesian Reconstruction of Signals Invariant Under a Space Group Symmetry From Fourier Transform Magnitudes,” IEEE Transactions on Image Processing, vol. 3, no. 4, pp. 438-449, July 1994.
  55. Peter C. Doerschuk, “Adaptive Bayesian Signal Reconstruction with A Priori Model Implementation and Synthetic Examples for X-ray Crystallography,” Journal of the Optical Society of America Series A, vol. 8, no. 8, pp. 1222-1232, August 1991.
  56. Peter C. Doerschuk, “Bayesian Signal Reconstruction, Markov Random Fields, and X-ray Crystallography,” Journal of the Optical Society of America Series A, vol. 8, no. 8, pp. 1207-1221, August 1991.
  57. Peter C. Doerschuk, Robert R. Tenney, and Alan S. Willsky, “Event Based Estimation of Interacting Markov Chains with Applications to Electrocardiogram Analysis,” International Journal of Systems Science, vol. 21, no. 2, pp. 285-304, 1990.
  58. Peter C. Doerschuk, Robert R. Tenney, and Alan S. Willsky, “Modeling Electrocardiograms Using Interacting Markov Chains,” International Journal of Systems Science, vol. 21, no. 2, pp. 257-283, 1990.
  59. Peter C. Doerschuk, Donald E. Gustafson, and Alan S. Willsky, “Upper Extremity Limb Function Discrimination Using EMG Signal Analysis,” IEEE Transactions on Biomedical Engineering, vol. BME-30, no. 1, pp. 18-29, January 1983.

In process:

  1. Nan Xu and P. C. Doerschuk, “Computation of real basis functions for the 3-D rotational polyhedral groups T, O, and I,” .